PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do009553.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 391aa    MW: 39860.6 Da    PI: 4.4924
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do009553.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.96.6e-07333357730
                 HHHHHHHHHHHHHHHHHHCTSCC.C CS
         HLH   7 erErrRRdriNsafeeLrellPk.a 30 
                 ++ErrRR+++N+++  Lr+++Pk +
  Do009553.1 333 MAERRRRKKLNDRLYMLRSVVPKiS 357
                 79********************944 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.09E-6324357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-4332357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-6333356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.00E-5333359No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MLPPFGANPL WAQEDCDPQQ QQHAPPSTPM GLGQGLEQQN LLALANAAAL GGGVFSTPSV  60
LDDDWYFNSA AGAGAQGSLL MAPPGQGSGL SLGAGSSQIF SLFNMGGVAP YDVHGFDLGL  120
SGGGGVSGGE LVSFAGAGSA SNSASLPLIS AGNAGFLGTF GGFGTAPAQM PEFAGLGGFD  180
MFNNGAGSTS AVLPPASAPL TAPFSARGKA AVLRPLEIFP PVGAQPTLFQ KRALRRNAGE  240
EDDDKKRKAE VALAAEAGAS SAGGGDTVLD DIDDDDGGSI DASGLNYDSE DARGVEESGK  300
KDEKDSNANS TVTAGGAGDG KGKRKGLPAK NLMAERRRRK KLNDRLYMLR SVVPKISKIC  360
ASQMQSFPPE WQTCSEDAMA IALLMVPTYM V
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1322340KRKGLPAKNLMAERRRRKK
2334341ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002449578.11e-136hypothetical protein SORBIDRAFT_05g019530
TrEMBLC5Y3901e-135C5Y390_SORBI; Putative uncharacterized protein Sb05g019530
STRINGSb05g019530.11e-135(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164637101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.45e-19bHLH family protein